PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G399200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 409aa    MW: 45786.4 Da    PI: 4.8481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G399200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12199250155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Aqcoe2G399200.1.p 199 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 250
                        79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-13197253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.41E-13197254No hitNo description
PROSITE profilePS5088815.428198249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-17198270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9199250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9204255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00351334398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MQRDEGNYST DLPGSYTGLD YSLDHQPPPL LMNKPRIGDI SGENNNIAMV DYMFNNPPQQ  60
QLSSSFGTST SLDKLNFADV MQFADFGPKL ALNQTKTTEE ENGIDPVYFL KFPVLNDRSQ  120
DQNLINAPLT GYNGNEFDEV SVGRNVTSLV EEEEPHVSEN NSMQLGFLGG TSLQKNPGSE  180
VKKRKRPRSV KTTEEVESQR MTHIAVERNR RKQMNEHLRV LRSLMPGSYV QRGDQASIIG  240
GAIEFVRELE QLLQCLESQK RRRLYGNGEA PRPMGDPNSL PIQQPQPPLF PPMPSPTDQI  300
KFGEYDDTGL LEETAENKSF LADVEVKVLG FDALIKILSR RRPGQLIKTI AALEDLQFNI  360
LHTNITTIEQ TVLYSFNVKV ASESRFTAED IASSVQQIFT FIHASSTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199210RMTHIAVERNRR
2259263KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071156.10.0PREDICTED: transcription factor FAMA
SwissprotQ56YJ81e-141FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A067KT330.0A0A067KT33_JATCU; Uncharacterized protein
STRINGPOPTR_0001s32160.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-129bHLH family protein